Development and Application of Microsatellites in Candidate Genes Related to Wood Properties in the Chinese White Poplar (Populus tomentosa Carr.)

Gene-derived simple sequence repeats (genic SSRs), also known as functional markers, are often preferred over random genomic markers because they represent variation in gene coding and/or regulatory regions. We characterized 544 genic SSR loci derived from 138 candidate genes involved in wood formation, distributed throughout the genome of Populus tomentosa, a key ecological and cultivated wood production species. Of these SSRs, three-quarters were located in the promoter or intron regions, and dinucleotide (59.7%) and trinucleotide repeat motifs (26.5%) predominated. By screening 15 wild P. tomentosa ecotypes, we identified 188 polymorphic genic SSRs with 861 alleles, 2–7 alleles for each marker. Transferability analysis of 30 random genic SSRs, testing whether these SSRs work in 26 genotypes of five genus Populus sections (outgroup, Salix matsudana), showed that 72% of the SSRs could be amplified in Turanga and 100% could be amplified in Leuce. Based on genotyping of these 26 genotypes, a neighbour-joining analysis showed the expected six phylogenetic groupings. In silico analysis of SSR variation in 220 sequences that are homologous between P. tomentosa and Populus trichocarpa suggested that genic SSR variations between relatives were predominantly affected by repeat motif variations or flanking sequence mutations. Inheritance tests and single-marker associations demonstrated the power of genic SSRs in family-based linkage mapping and candidate gene-based association studies, as well as marker-assisted selection and comparative genomic studies of P. tomentosa and related species.     

Morphological,chorological and ecological plasticity of Cistus incanus in the southern Balkans

Abstract

Two subspecies of Cistus incanus L. occurring in the southern Balkans were studied: C. incanus L. ssp. incanus and C. incanus ssp. creticus (L.) Heywood. After studying the morphological differences, the communities dominated by these two subspecies were sampled according to the central European method. The localities of the relevés show the distribution pattern of the two subspecies. The typical subspecies can be found in the area of distribution of thermophilous deciduous forests of Carpinion orientalis, whereas the subspecies creticus grows in the area of the evergreen broad‐leaved forests of Quercetea ilicis. The communities were classified as Diantho–Cistetum incani Micevski et Matevski ex ?arni, Matevski et ?ilc ass. nova hoc loco and Calicotomo villosae–Cistetum cretici Oberdorfer 1954. Analyses of traits (life span, life form, proportion of certain families, bioindicator values and chorotypes) reveal that the harshest site conditions prevail within Diantho–Cistetum incani, which appears as an initial stage of the vegetation succession. Calicotome–Cistetum cretici is a subsequent stage of succession, since the extreme degradation of vegetation on these sites results in ephemeral communities dominated by Poa bulbosa assigned to Romulion.     

Leaflet morphometric variation of service tree (Sorbus domestica L.) in the Balkan Peninsula

Abstract

In most European countries, the service tree (Sorbus domestica L.) is a rare and threatened species and its conservation has been recognised as a priority. The aim of this study was to asses its morphologic variation in the western and central part of the Balkan Peninsula and in southern Central Europe. Three populations were analysed: one in Serbia, one in Bosnia and Herzegovina and one in Slovenia. In each population 30 trees were selected, and from each tree 30 leaves were collected for morphometric analysis based on nine leaflet morphological traits. Univariate (ANOVA) and multivariate (MANOVA) analysis of variance were used to estimate the variation within- and between populations and a discriminant analysis was performed to examine the structure of the between-population differences. The values of particular morphological traits found in our study did not differ considerably from the values reported elsewhere. The results revealed significant within- and between population variation. Variation within populations was highly significant for all the scored leaf morphological traits, while variation between populations was significant for all the studied traits except for the leaflet length. The discrimination between the three populations was significant. High percentages of correctly classified samples demonstrate good discriminating employability of the analysed leaf morphological traits and indicate differentiation of the analysed populations.     

Independent sources of condition dependency and multiple pathways determine a composite trait: lessons from carotenoid‐based plumage colouration

Many colour ornaments are composite traits consisting of at least four components, which themselves may be more complex, determined by independent evolutionary pathways, and potentially being under different environmental control. To date, little evidence exists that several different components of colour elaboration are condition dependent and no direct evidence exists that different ornamental components are affected by different sources of variation. For example, in carotenoid‐based plumage colouration, one of the best‐known condition‐dependent ornaments, colour elaboration stems from both condition‐dependent pigment concentration and structural components. Some environmental flexibility of these components has been suggested, but specifically which and how they are affected remains unknown. Here, we tested whether multiple colour components may be condition dependent, by using a comprehensive 3 × 2 experimental design, in which we carotenoid supplemented and immune challenged great tit nestlings (Parus major) and quantified effects on different components of colouration. Plumage colouration was affected by an interaction between carotenoid availability and immune challenge. Path analyses showed that carotenoid supplementation increased plumage saturation via feather carotenoid concentration and via mechanisms unrelated to carotenoid deposition, while immune challenge affected feather length, but not carotenoid concentration. Thus, independent condition‐dependent pathways, affected by different sources of variation, determine colour elaboration. This provides opportunities for the evolution of multiple signals within components of ornamental traits. This finding indicates that the selective forces shaping the evolution of different components of a composite trait and the trait's signal content may be more complex than believed so far, and that holistic approaches are required for drawing comprehensive evolutionary conclusions.     

大凉螈繁殖生态

大凉螈是我国特有的珍稀有尾两栖动物,其种群数量目前呈现明显下降趋势,然而涉及该物种保护的繁殖生态学研究仍十分匮乏。通过融合围栏陷阱及标志重捕的样方调查法,对大凉螈石棉栗子坪种群繁殖个体和变态登陆幼体的迁徙、繁殖群体种群大小、繁殖场内雌雄有效性比变化等进行了研究。运用Jolly-Seber法估测了繁殖种群大小,运用单因素方差分析或Kruskal-Wallis秩和检验比较了不同时期进入繁殖场的雄性大凉螈头体长及体重,运用t检验或者Wilcoxon秩和检验比较了雌雄性间形态上的差异,运用t检验、t′检验或Wilcoxon秩和检验比较了野外抱对雄性与非抱对雄性间的体征差别,运用Pearson相关分析探讨了雌性产卵量与其身体形态的关系,同时观察了卵的孵化情况。研究结果表明:大凉螈的繁殖季为每年的4月下旬到7月下旬,幼体最早于8月上旬变态登陆。估测调查地繁殖场内雄性大凉螈繁殖种群大小约为391尾,雄螈较雌螈更早进入繁殖场且在场内停留时间更长,体重较轻的雄螈较晚迁入繁殖场。有效性比明显偏雄(雌/雄:0.03—0.10)。雌雄间具明显性二型性,雌性个体的头体长、体重及肥满度均大于雄性,而雄性的尾高和尾长占全长的比例则大于雌性。对比自然抱对雄性和非抱对雄性个体发现,抱对个体在头体长、体重和尾高等体征方面显著大于非抱对个体,暗示这些形态特征可能在雄性竞争配偶的过程中起到关键作用。雌螈在室内条件下平均产卵数为176枚,产卵历时2—4 d,产卵量与雌性肥满度正相关,卵的平均孵化期为15.7 d,孵出幼体平均全长为9.74 mm。     

海岛植物不同演替阶段植物功能性状与环境因子的变化规律

植物功能性状与环境之间的关系是功能性状研究的重点,环境因子驱使植物功能性状发生变化,进而推动群落发生演替。以平潭岛4个不同演替阶段的森林植被(灌草丛、针叶林、针阔混交林、常绿阔叶林)为研究对象,结合不同群落演替阶段的物种特征和群落结构,分析海岛不同演替阶段茎、叶功能性状的变化规律,以及功能性状与环境因子的关系。结果表明:(1)随着演替的进行,土壤养分和水分逐渐增加,土壤pH逐渐下降。比叶面积(SLA)、叶片氮含量(LNC)、叶片磷含量(LPC)、茎氮含量(SNC)、茎磷含量(SPC)下降后上升,叶厚度(LT)、叶片碳含量(LCC)、茎碳含量(SCC)与之相反,叶干物质含量(LDMC)、茎组织密度(STD)逐渐上升。(2)冗余分析表明,演替早期植物主要分布在土壤pH、容重高的贫瘠环境,拥有较高SLA、SNC、SPC、LPC的性状组合;演替后期植物主要分布在土壤养分和水分高的肥沃环境,拥有较高的STD、LDMC、LCC、LNC的性状组合。其中,土壤有机质和全氮含量是影响海岛植物演替过程中功能性状变化的关键环境因子。研究海岛植物功能性状与环境之间的关系随演替的变化规律,探讨各演替阶段功能性状和环境特征,以及功能性状如何响应环境变化。旨在为今后选择合适的树种进行海岛植被修复和重建提供依据。     

Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population

Plants are considered an important food and nutrition source for humans. Despite advances in plant seed metabolomics, knowledge about the genetic and molecular bases of rice seed metabolomes at different developmental stages is still limited. Here, using Zhenshan 97 (ZS97) and Minghui 63 (MH63), we performed a widely targeted metabolic profiling in seeds during grain filling, mature seeds and germinating seeds. The diversity between MH63 and ZS97 was characterized in terms of the content of metabolites and the metabolic shifting across developmental stages. Taking advantage of the ultra‐high‐density genetic map of a population of 210 recombinant inbred lines (RILs) derived from a cross between ZS97 and MH63, we identified 4681 putative metabolic quantitative trait loci (mQTLs) in seeds across the three stages. Further analysis of the mQTLs for the codetected metabolites across the three stages revealed that the genetic regulation of metabolite accumulation was closely related to developmental stage. Using in silico analyses, we characterized 35 candidate genes responsible for 30 structurally identified or annotated compounds, among which LOC_Os07g04970 and LOC_Os06g03990 were identified to be responsible for feruloylserotonin and l ‐asparagine content variation across populations, respectively. Metabolite?agronomic trait association and colocation between mQTLs and phenotypic quantitative trait loci (pQTLs) revealed the complexity of the metabolite?agronomic trait relationship and the corresponding genetic basis.